Tutorials to be posted

This page was created to document the bioinformatics tutorial that we use and/or teach. Hopefully, by having all these tutorials documented, we will have a reference point in case there is a memory leakage, and also we can save time from teaching the same thing again and again by directing our students to this page first.

Below is a wish list of tutorials that I hope to document:

1. How to remove sequence duplicates from Fasta files
2. How to automate blast search using Netblast
3. How to use artemis
4. How to get representative sequences using blastclust
5. How to run phylogenetic tree using Phylip
6. How to run muscle alignment
7. How to use LibSVM
8. How to use Mega to identify conserved sequences considering including alignment positions with gaps and invariant residues
9. How to use client based blast
10. How to setup web blast using Bioslax
11. How to setup BioSlax as a webserver
12. How to configure MySQL in BioSlax
13. How to make backup of bioslax live CD
14. how to boot bioslax using thumb drive
15. How to make fasta file description lines unique for data downloaded directly from NCBI
16. How to use Meme
17. How to use HMM and create HMM profiles
18. How to use ANN
19. MS Excel shortcut/functions tutorials
20. MS Word shortcut/functions tutorials
21. How to configure network in Bioslax when it does not auto detect\
22. How to use PyMol to analyse exposed versus buried residues
23. How to use Swiss Model to model 3D structure
24. How to use Modeller to model 3D structure
25. How to use Rasmol
26. Blast parameters for short sequences
27. How to use TEPITOPE
28. Computing entropy using AVANA
29. Computing mutual information between two datasets using AVANA


anymore???....please add on and hopefully we will have post for each one of them in the near future!